Xiaoli Li, PhD   Principal investigator   Institute for Infocomm Research   1 Fusionopolis Way #21-01 Connexis   Singapore 138632   Email: xlli@i2r.a-star.edu.sg   Tel: 65 64082167; Fax: 65 67761378   I2R Webmail   Chinese Name: 李晓黎 (Li Xiaoli)

Adjunct Assistant Professor   Division of Information Systems   School of Computer Engineering   Nanyang Technological University   Nanyang Avenue, Singapore 639798   NTU Webmail   Email: xlli@ntu.edu.sg

Research Interests

• Machine learning,
• Data Mining (WEB and Text Mining),
• Bioinformatics
• Information Retrieval

Professional Activities

• Editor-in-Chief
  • International Journal of Knowledge Discovery in Bioinformatics (IJKDB)
    • Online Submission system (IJKDB)
    • Online Submission Instructions (IJKDB)

• Editorial Board
  • International Journal of Data Analysis Techniques and Strategies (IJDATS)
  • Journal of Information Technology Research (JITR)
  • IGI Editorial Advisory Review Board

• Program Committee Chairs, Workshop/Session Chairs
  • Workshop Chair of Biological Data Mining and its Applications in Healthcare (ICDM 2011) .
  • Session Chairs of Social Networks (1 and 2) and Natural Language Processing (3) of The Twenty-Fifth AAAI Conference on Artificial Intelligence (AAAI 2011) .
  • Session Chair on Graph and Network Mining of Biological Data Mining and its Applications in Healthcare (ICDM 2010) .
  • Workshop Chair of Biological Data Mining and its Applications in Healthcare (ICDM 2010) .
  • Local Organising Chair of The The 2nd International Conference on Biomedical and Pharmaceutical Engineering (ICBPE 2010).
  • Session Chair on Text Mining/Unlabeled Data of The 18th European Conference on Machine Learning (ECML2007) and the 11th European Conference on Principles and Practice of Knowledge Discovery in Databases (PKDD2007) .

• Program Committee Memberships
  • Program Committee Member of The Twenty-Sixth AAAI Conference on Artificial Intelligence (AAAI 2012) .
  • Program Committee Member of The IEEE International Conference on Data Mining series (ICDM 2012) .
  • Program Committee Member of The European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML-PKDD 2012) .
  • Program Committee Member of The 2012 IEEE International Conference on Granular Computing (GrC 2012) .
  • Program Committee Member of IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2012) .
  • Program Committee Member of The International Conference on Bioinformatics (InCoB 2012) .
  • Program Committee Member of The 16th Pacific-Asia Conference on Knowledge Discovery and Data Mining(PAKDD 2012) .
  • Program Committee Member of The Twenty-Fifth AAAI Conference on Artificial Intelligence (AAAI 2011) .
  • Program Committee Member of The IEEE International Conference on Data Mining series (ICDM 2011) .
  • Program Committee Member of The 3rd Asian Conference on Machine Learning (ACML2011) .
  • Program Committee Member of the ACM International Conference On Bioinformatics and Computational Biology (BCB 2011) .
  • Program Committee Member of IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2011) .
  • Program Committee Member of IEEE International Conference on Granular Computing (GrC 2011) .
  • Program Committee Member of The IEEE International Conference on Data Mining series (ICDM 2010) .
  • Program Committee Member of The 2nd Asian Conference on Machine Learning (ACML2010).
  • Program Committee Member of the ACM International Conference On Bioinformatics and Computational Biology (BCB 2010) .
  • Program Committee Member of IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2010) .
  • Program Committee Member of IEEE International Conference on Granular Computing (GrC 2010) .
  • Program Committee Member of International Conference on Bio-Science and Bio-Technology (BSBT 2010) .
  • Program Committee Member of IEEE - Prognostics & System Health Management Conference 2010 (PHM-2010).
  • Program Committee Member of The International Conference on Bioinformatics (BIOINFORMATICS 2010) .
  • Program Committee Member of The IEEE International Conference on Data Mining series (ICDM 2009) .
  • Program Committee Member of The 1st Asian Conference on Machine Learning (ACML 2009) .
  • Program Committee Member of The IEEE International Conference on Bioinformatics & Biomedicine (BIBM 2009) .
  • Program Committee Member of The 2009 IEEE International Conference on Granular Computing (IEEE GrC 2009) .
  • Program Committee Member of The 5th International Conference on Advanced Data Mining and Applications (ADMA2009) .
  • Program Committee Member of The International Conference on Machine Learning and Cybernetics (ICMLC2009) .
  • Program Committee Member of The International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing (IJCBS 2009) .
  • Program Committee Member of The 2009 International Conference on Bio-Science and Bio-Technology (BSBT 2009) .
  • Program Committee Member of The Complex Networks in Information & Knowledge Management (CNIKM 2009) .
  • Program Committee Member of The Fourtheenth ACM SIGKDD International Conference on Knowledge Discovery & Data Mining (KDD 2008) .
  • Program Committee Member of IEEE International Conference on Bioinformatics and BioEngineering (BIBE2008).
  • Program Committee Member of IEEE International Conference on Bioinformatics and Biomedicine Philadelphia (BIBM2008).
  • Program Committee Member of The IEEE International Conference on Machine Learning and Cybernetics (ICMLC2008) .
  • Program Committee Member of The 2008 International Conference on Bioinformatics & Computational Biology (BIOCOMP 2008) .
  • Program Committee Member of The 2008 International Conference on Artificial Intelligence (ICAI 2008) .
  • Program Committee Member of The International Conference on Bio-Science and Bio-Technology (BSBT 2008) .
  • Program Committee Member of 1st International Workshop on Optimal Data Mining in Gene Expression Analysis (ODGEA’2008)
  • Program Committee Member of The Seventh SIAM International Conference on Data Mining (SDM 2007) .
  • Program Committee Member of The 2007 IEEE International Conference on BioInformatics and BioMedicine (BIBM 2007) .
  • Program Committee Member of The 2007 International Conference on Artificial Intelligence (ICAI'07) .
  • Program Committee Member of The 2007 International Conference on Bioinformatics and Computational Biology (BIOCOMP'07).
  • Program Committee Member of The IEEE International Conference on Machine Learning and Cybernetics (ICMLC2007) .
  • Program Committee Member for Poster of The 18th International Conference on Genome Informatics (GIW 2007).
  • Program Committee Member of The ACM Fifteenth Conference on Information and Knowledge Management (CIKM 2006) .
  • Program Committee Member of The 2006 International Conference on Bioinformatics and Computational Biology (BIOCOMP'06).
  • Program Committee Member of The Second International Conference on Advanced Data Mining and Applications (ADMA'06) .
  • Program Committee Member of The HLT/EMNLP 2005 Interactive Demonstrations Proceedings.

• Journal Paper Reviewing
  • Bioinformatics Journal
  • BMC Journal of Bioinformatics
  • SIGKDD Explorations
  • International Journal of Data Mining and Bioinformatics (IJDMB)
  • IEEE Transactions on Knowledge and Data Engineering (TKDE)
  • IEEE Transactions on Systems, Man, and Cybernetics
  • ACM Transactions on Knowledge Discovery in Data
  • Knowledge and Information Systems (KAIS)
  • Computational Intelligence
  • Pattern Recognition
  • Information Processing Letters
  • Engineering in Medicine and Biology Magazine

Professional Memberships

• Member, Association for Computing Machinery (ACM). Email: xiaolili@acm.org
• Member, ACM Special Interest Group on Knowledge Discovery in Data and Data Mining (SIGKDD).
• Member, Institute of Electrical and Electronics Engineers (IEEE). xlli@ieee.org

Research Projects and Systems

CACHET- Discovery of Protein Complexes with Core-Attachment Structures from TAP Data

Social Network Mining System - Researcher Social Network Mining

Biomedical Social Network Mining System - Biomedical Social Network Mining System

COACH- COre-AttaCHment based Complex Mining

• Visualizing the collaboration networks among the researchers
• Evaluating on the research capabilities of each indivudual research based on their collaboration network and publication quality
• Mining Rising Stars from the bibliography Networks
• Demoing dynamic features of the network over time

• Learning from Positive and Unlabeled Examples (Published papers in ICML-02, IJCAI-03, ICDM-03, AAAI-04, ECML-05, IJCAI-07, ECML-07), Download our system
• LPU system - LPU
• Spy-EM (S-EM) system - S-EM
• Predicting Protein-Protein Interactions from Domain Interactions(Published in in Journal of IJDMB-07)
• Prediction proteins' functions (Published in Journal of BMC Bioinformatics)
• Mining Lethal Proteins from Protein Interaction Network (GIW-07)
• Neighborhood Functional Centrality
• Cross Function Domain Interaction Graph (BIOINFO-2005)
• Mining Protein Interaction Network for Protein Complexes (GIW Best Paper, CSB-07)
• Predicted Complexes are available

Awards

• Paper ECODE: Event-Based Community Detection from Social Networks has been selected as the Best Paper Runner-Up Award of the 16th International Conference on Database Systems for Advanced Applications (DASFAA 2011), Hong Kong
• Champions of Opportunity Activity Recognition Challenge (Conducted by EU Consortium), Task B1: Automatic Activity Data Segmentation and Task B2: Multimodal activity recognition: Gestures, 2011.
• Poster Mining for domain dependency sets from protein interactions has been selected as the Best POSTER of the 12th Annual International Conference Research in Computational Molecular Biology (RECOMB 2008), Singapore.
• Research A Probabilistic Graph-theoretic Approach to Integrate Multiple Predictions has been selected as Best Performance Award of the Protein-Protein Subnetwork Challenge, the 2nd Dialogue for Reverse Engineering Assessments and Methods (DREAM 2007), USA
• Paper Interaction Graph Mining for Protein Complexes Using Local Clique Merging has been selected as the Best PAPER of the 16th International Conference on Genome Informatics (GIW 2005), Japan