Xiaoli Li's Selected Publications

BOOKS

  1. Xiao-Li Li and See-Kiong Ng(Eds.) (2008) "Biological Data Mining in Protein Interaction Networks”, IGI Global, USA, 2009.

    2. PAPERS (Journals and Conferences)

  2. Minh Nhut Nguyen, Xiao-Li Li, See-Kiong Ng, " Ensemble Based Positive Unlabeled Learning for Time Series Classification, Accepted by International Conference on Database Systems for Advanced Applications (DASFAA 2012).

  3. Ghim Eng Yap, Xiao-Li Li, Philip S. Yu, " Effective Next-Items Recommendation via Personalized Sequential Pattern Mining, Accepted by International Conference on Database Systems for Advanced Applications (DASFAA 2012).

  4. Hong Cao, Xiao-Li Li, Yew-Kwong Woon, See-Kiong Ng, "SPO: Structure Preserving Oversampling for Imbalanced Time Series Classification ", IEEE International Conference on Data Mining (ICDM 2011).

  5. Peng Yang, Xiao-Li Li, Min Wu, Chee-Keong Kwoh, See-Kiong Ng, "Inferring Gene-Phenotype Associations via Global Protein Complex Network Propagation ", PLoS ONE 6(7), 2011. [PDF]

  6. Wei Wei, Gao Cong, Xiao-Li Li, See-Kiong Ng, Guohui Li, "Integrating Community Question and Answer Archives ", Proceedings of the 25th AAAI Conference on Artificial Intelligence (AAAI-11), San Francisco, USA, August 7-11, 2011. [PDF]

  7. Zhipeng Xie, Chee-Keong Kwoh, Xiao-Li Li*, Min Wu, "Construction of Co-complex Score Matrix for Protein Complex Prediction from AP-MS Data ", Bioinformatics [ISMB/ECCB] 27(13): 159-166 (2011). * Corresponding author [PDF]

  8. Minh Nhut Nguyen, Xiao-Li Li, See-Kiong Ng, "Positive Unlabeled Learning for Time Series Classification ", Proceedings of the 22nd International Joint Conference on Artificial Intelligence (IJCAI 2011), Barcelona, Spain, July 16-22, 2011. [PDF]

  9. Xiao-Li Li, Aloysius Tan, Philip S. Yu, and See-Kiong Ng, "ECODE: Event-Based Community Detection from Social Networks ", Proceedings of Database Systems for Advanced Applications(DASFAA, 2011), Hong Kong, April, 22-25, 2011. (BEST PAPER RUNNER-UP AWARD FOR DASFAA 2011) [PDF]

  10. Kar Leong Tew, Nguyen Minh Nhut, Sintiani Dewi Teddy, Xiao-Li Li, "Real-time Adaptive Classification System for Intelligent Sensing in Manufacturing Environment (A Feasibility Study) ", IEEE International Conference on Granular Computing, Taiwan, 2011.

  11. Min Wu, Xiao-Li Li*, Chee-Keong Kwoh, See-Kiong Ng, Limsoon Wong, "Discovery of Protein Complexes with Core-Attachment Structures from TAP Data ", Journal of Computational Biology, 18 (0), 2011. * Corresponding author [PDF]

  12. Xiaoxu Han, Xiao-Li Li, "Multi-resolution Independent Component Analysis for High-Performance Tumor Classification and Biomarker Discovery ", APBC 2011, BMC Bioinformatics. [PDF]

  13. Kar Leong Tew, Sintiani D. T. , Watt P.Y., Xiao-Li Li, "A Systematic Approach towards Manufacturing Health Management ", Proceedings of IEEE Conf Prognostics System Health Management, 2011.

  14. Tran To Chinh Su, Stephanus Daniel Handoko, Christian Schonbach, Xiao-Li Li, and Chee Keong Kwoh, "A Possible Mutation that Enables H1N1 Influenza A Virus to Escape Antibody Recognition ", IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM 2010), Hong Kong, Dec. 18-21, 2010. [PDF]

  15. Xiao-Li Li, Bing Liu and See-Kiong Ng, "Negative Training Data Can Be Harmful to Text Classification ", Conference on Empirical Methods in Natural Language Processing (EMNLP 2010), Massachusetts, USA, October 9-11, 2010. [PDF]

  16. Min Wu, Xiao-Li Li *, Hon Nian Chua, Chee-Keong Kwoh and See-Kiong Ng, "Integrating Diverse Biological and Computational Sources for Reliable Protein-Protein Interactions ", InCoB 2010, BMC Bioinformatics 2010, 11(Suppl 7):S8, [PDF] * Corresponding author

  17. Xiao-Li Li, Lei Zhang, Bing Liu and See-Kiong Ng, "Distributional Similarity vs. PU Learning for Entity Set Expansion ", ACL 2010. [PDF]

  18. Xiao-Li Li, Min Wu, Chee-Keong Kwoh and See-Kiong Ng, "Computational approaches for detecting protein complexes from protein interaction networks: a survey ", BMC Genomics 2010, 11(Suppl 1):S3 [PDF]

  19. Hon Nian Chua, Willy Hugo, Guimei Liu, Xiao-Li Li, Limsoon Wong and See-Kiong Ng, "A probabilistic graph-theoretic approach to integrate multiple predictions for the protein-protein subnetwork prediction challenge ", Annals of the New York Academy of Sciences, Vol 1158:224-33, 2009.[PDF]

  20. Min Wu, Xiao-Li Li *, Chee-Keong Kwoh and See-Kiong Ng, "A Core-Attachment based Method to Detect Protein Complexes in PPI Networks ", BMC Bioinformatics, Vol 10:169, 2009.[PDF] * Corresponding author

  21. Kar Leong Tew and Xiao-Li Li (2009) “Discovering Lethal Proteins in Protein Interaction Network ”, in Biological Data Mining in Protein Interaction Networks, ", X.-L. Li and S.-K. Ng (Eds.), IGI Global, USA. 2009.

  22. Xiao-Li Li , Philip S. Yu, Bing Liu, See-Kiong Ng, "Positive Unlabeled Learning for Data Stream Classification", SIAM International Conference on Data Mining (SDM), 2009.[PDF]

  23. Xiao-Li Li , Chuan-Sheng Foo, Kar Leong Tew, See-Kiong Ng, "Searching for Rising Stars in Bibliography Networks", Database Systems for Advanced Applications(DASFAA), 2009.[PDF]

  24. Xiao-Li Li(2009) “Partially Supervised Text Categorization ”, Handbook of Research on Text and Web Mining Technologies, Min Song, Yi-Fang Brook Wu (Ed.), IGI Global, USA. 2009.

  25. Hon Nian Chua, Kar Leong Tew, Xiao-Li Li, Seekiong Ng, "A Unified Scoring Scheme for Detecting Essential Proteins in Protein Interaction Networks",Proceedings of 20th IEEE Int'l Conference on Tools with Artificial Intelligence, Australia, Ohio, USA, November 3-5, 2008. [PDF]

  26. Min Wu, Xiao-Li Li, Chee-Keong Kwoh, "Algorithms for Detecting Protein Complexes in PPI Networks: An Evaluation Study", Proceedings of Third IAPR International Conference on Pattern Recognition in Bioinformatics (PRIB 2008), Australia, Oct, 15-17, 2008. [PDF]

  27. Xiao-Li Li and See-Kiong Ng (2008) “Positive Unlabeled Learning for Document Classification”, in Encyclopedia of Data Warehousing and Mining (2nd Edition), J. Wang (Ed), IGI Global, USA, 2008.

  28. Xiao-Li Li, Jun-Xiang. Lee, B. Veeravalli, See-Kiong Ng, “Inferring Transcription Factor Interactions Using a Novel HV-SVM Classifier,” International Journal of Computational Biology and Drug Design, 2008. IJCBDD

  29. Min Wu Xiaoli Li, Chee-Keong Kwoh, "Semantic labeling to identify reliable interactions in the protein interaction network", Proceedings of The 2nd International Conference on Bioinformatics and Biomedical Engineering (ICBBE 2008), Shanghai,China. Paper in IEEE

  30. Xiao-Li Li, Seekiong Ng. " Mining for domain dependency sets from protein interactions", 12th Annual International Conference Research in Computational Molecular Biology ( POSTER, RECOMB 2008), Singapore, (BEST POSTER AWARD).

  31. Kar Leong Tew, Xiao-Li Li and Soon-Heng Tan. "Functional Centrality: Detecting lethality of proteins in protein interaction networks.", Proceedings of 18th International Conference on Genome Informatics (GIW2007). [PDF]

  32. Xiao-Li Li, Bing Liu, Seekiong Ng. " Learning to Classify Documents with Only a Small Positive Training Set", Proceedings of The 18th European Conference on Machine Learning (ECML/PKDD-2007), [PDF]

  33. Xiao-Li Li, Chuan-Sheng Foo, See-Kiong Ng, "Discovering Protein Complexes in Dense Reliable Neighborhoods of Protein Interaction Networks", LSS 6th Annual International Conference on Computational Systems Bioinformatics, CSB-2007, P157-168. [PDF]

  34. Xiao-Li Li, Bing Liu, Seekiong Ng. "Learning to Identify Unexpected Instances in the Test Set .", Proceedings of Twentieth International Joint Conference on Artificial Intelligence, P2802-2807, India, 2007 (IJCAI-07)), [PDF]

  35. Xiao-Li Li, Jun-Xiang Lee, Bharadwaj Veeravalli, and See-Kiong Ng. "An HV-SVM Classifier to Infer TF-TF Interactions using Protein Domains and GO Annotations", Proceedings of the IEEE 7th International Symposium on Bioinformatics and Bioengineering (BIBE 2007) Boston, USA, October 14-17, 2007. [PDF]

  36. Xiao-Li Li, Yin-Chet Tan, and See-Kiong Ng, "Systematic Gene Function Prediction from Gene Expression Data by Using a Fuzzy Nearest-Cluster Method", BMC Bioinformatics, 7(Suppl 4): S23, 2006. [PDF]

  37. Xiao-Li Li, Soon-Heng Tan, and See-Kiong Ng, “Unraveling Multi-Domain Dependencies in protein-Protein Interactions", The First International Conference on Computational Systems Biology, Shanghai, China, July 20-23, 2006. [PDF]

  38. Xiao-Li Li, Soon-Heng Tan, and See-Kiong Ng. "Improving domain-based protein interaction prediction using biologically-significant negative dataset.", International Journal of Data Mining and Bioinformatics (IJDMB), Volume 1, Number 2, P138 - 149, 2006. [PDF]

  39. Xiao-Li Li, Yin-Chet Tan, and See-Kiong Ng, "Systematic Gene Function Prediction Using a Fuzzy Nearest-Cluster Method on Gene Expression Data", in Proceedings of the Symposium of Computations in Bioinformatics and Bioscience", Vol. 1, P 171-178, Hangzhou, China, 20-24 June, 2006.

  40. Xiao-Li Li, Soon-Heng Tan, Chuan-Sheng Foo and See-Kiong Ng. "Interaction Graph Mining for Protein Complexes Using Local Clique Merging." in Genome Informatics, Vol. 16, No.2. 2005. [PDF] (BEST PAPER AWARD)

  41. Xiao-Li Li, Soon-Heng Tan, See-Kiong Ng. "Protein Interaction Prediction Using Inferred Domain Interactions and Biologically-Significant Negative Dataset." ICCSA, 318-326. 2005. [PDF]

  42. Xiao-Li Li, Soon-Heng Tan, See-Kiong Ng. "Exploring Cross-Function Domain Interaction Map." in Proceedings of the 2005 International Joint Conference of InCoB, AASBi and KSBI (BIOINFO), Busan, Korea, P 431-436. 2005.[PDF]

  43. Xiao-Li Li, Bing Liu. "Learning from Positive and Unlabeled Examples with Different Data Distributions." in Proceedings European Conference on Machine Learning (ECML-05), [PDF]

  44. Bing Liu, Xiao-Li Li, Wee Sun Lee and Philip S. Yu. "Text Classification by Labeling Words" in Proceedings of Nineteeth National Conference on Artificial Intellgience (AAAI-2004), San Jose, USA, July 2004. [PDF]

  45. Xiao-Li Li, Rohit Joshi, Sreeram Ramachandaran, Tze-Yun Leong. "Classifying Biomedical Citations without Labeled Training Examples." Proceedings of the Third IEEE International Conference on Data Mining (ICDM'04), 455-458. 2004. [PDF]

  46. Xiao-Li Li, and Bing Liu. "Dealing with Different Distributions in Learning from Positive and Unlabeled Web Data." WWW-2004 poster paper. [PDF]

  47. Xiao-Li Li, Tze-Yun Leong. A Support Vector Machine Approach to Solving the Breast Cancer Diagnosis Problem, MEDINFO 2004.

  48. Rohit Joshi, Xiao-Li Li, Sreeram Ramachandaran, and Tze Yun Leong. "Automatic Model Structuring from Text using BioMedical Ontology." Proceedings of AAAI Workshop Adaptive Text Extraction and Mining , 74-79. 2004. [PDF]

  49. Lan Yi, Bing Liu, and Xiao-Li Li. "Eliminating Noisy Information in Web Pages for Data Mining." Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery & Data Mining (KDD-2003), Washington, DC, USA, August 24 - 27, 2003. [PDF] (More than 200 citations according to Google Scholar).

  50. Bing Liu, Yang Dai, Xiao-Li Li, Wee Sun Lee and and Philip Yu. "Building Text Classifiers Using Positive and Unlabeled Examples." in Proceedings of the Third IEEE International Conference on Data Mining (ICDM'03), Melbourne, Florida, November 19-22, 2003. [PDF] (More than 100 citations according to Google Scholar).

  51. Xiao-Li Li and Bing Liu. "Learning to classify text using positive and unlabeled data." Proceedings of Eighteenth International Joint Conference on Artificial Intelligence (IJCAI-03), Aug 9-15, 2003, Acapulco, Mexico, [PDF]. (More than 100 citations according to Google Scholar).

  52. Xiao-Li Li, Bing Liu, Ton-Heng Phang, Minqing Hu, "Using Micro Information Unit for Internet Search," ACM CIKM-2002, McLean, VA, Nov 5-9, 2002. [PDF]

  53. Haoran Wu, Tong-Heng Pang, Bing Liu, Xiao-Li Li. "A Refinement Approach to Handling Model Misfit in Text Categorization," Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery & Data Mining (KDD-2002, full paper), Edmonton, Canada, July 23-26, 2002. [PDF]

  54. Bing Liu, Wee Sun Lee, Philip S Yu and Xiao-Li Li. Partially Supervised Classification of Text Documents. Proceedings of the Nineteenth International Conference on Machine Learning (ICML-2002), 8-12, July 2002, Sydney, Australia. [PostScript] [Full Paper] (More than 100 citations according to Google Scholar ).

  55. Xiao-Li Li, Bing Liu, Tong-Heng Phang, and Minqing Hu. "Web Search Based on Micro Information Units." WWW-2002 (poster), Honolulu, Hawaii, USA 7-11 May 2002. [PDF]

  56. Xiao-Li Li, Zhongzhi Shi. " Innovating web page classification through reducing noise.", Journal of Computer Science and Technology, Volume 17 , Issue 1, Pages: 9 - 17, 2002. [PDF]

  57. Xiao-Li Li, Liu Jimin, Shi Zhongzhi, A Chinese Web page Classifier Based on Support Vector Machine and Unsupervised Clustering, Chinese Journal of Computers, VOL24, NO1, P. 62-68, 2001. (In Chinese, More than 100 citations according to Google Scholar).

  58. Ye Shiren, You Xiangtao, Shi Zhongzhi, Xiao-Li Li, Efficient Similarity Computing Methods in High Dimentsional Data, Journal of Computer Research and Development, Vol, 37, No. 10, P. 1166-1172, 2001.

  59. Xiao-Li Li, Shi Zhongzhi, Dong Mingkai, Personalized service for search engine, the sixth national Artificial Intelligence conference, Beijing, 2001.

  60. Xiao-Li Li, Shi Zhongzhi, The Concept-Reasoning Network and its Application in Text Classification, Journal of Computer Research and Development, Vol. 37, No. 9, P. 1032-1038, 2000. (In Chinese, ~ 100 citations according to Google Scholar).

  61. Xiao-Li Li, Jimin Liu, Zhongzhi Shi. A Document Classifier Based on Word Semantic Association. PRICAI 2000,

  62. Xiao-Li Li, Liu Jimin, Shi Zhongzhi. Combine support vector machines with unsupervised clustering in text classification. Proceedings of Conference on Intelligent Information Processing 16th World Computer Congress, pp.398-405, Beijing, China, 2000

  63. Xiao-Li Li, Shi Zhongzhi, A data mining method to acquire part of speech rules in Chinese text, Journal of Computer Research and Development, Vol. 27, No. 12, P. 1409-1414, 2000.

  64. Lu Song, Xiao-Li Li, Bai Suo, Wangshi, An Improved Approach to Weighting Terms in Text, Jounral of Chinese Information Processing, 14(6): 8-13, 2000. (In Chinese, more than 100 citations according to Google Scholar).

  65. Zhongzhi Shi, Wei Li, Hu Cao and Xiaoli Li, Distributed Information Retrieval Agent JMAT, First Asia-Pacific Conference on Intelligent Agent Technology (IAT'99), Hongkong.

  66. Xiao-Li Li, Liang Yongquan and Shi Zhongzhi, A Dynamic User Interest Acquiring Algorithm in the Internet Information Retrieval, The Fifth International Conference for Young Computer Scientists, Nanjing, 1999.

  67. Xiao-Li Li, Liang Yongquan, Shi Zhongzhi, Capturing User Interest and High quality pages in Internet Information Retrieval, International Conference on Machine Translation & Computer Language Information Processing, Beijing, 1999.

  68. Liang Yongquan, Xiao-Li Li and Shi Zhongzhi, A Computer Go-Playing Model Based on Agent, The Fifth International Conference for Young Computer Scientists, 1999, Nanjing.

  69. Shi Zhongzhi, Ye Shiren, Xiao-Li Li, You Xiangtao, Gong Xiujun, Wu Bin, Liu Huan, Zucker, data mining, knowledge engineering and science symposium, Beijing, 1999.

  70. Guo Binyan, Xiao-Li Li, Apply the EBL Model in Chinese Sentence Analysis, Pattern Recognition and Artificial Intelligence, Vol , 9, No. 2, 1996.

  71. Xiao-Li Li, Guo Binyan, Liu Futao, Improve the efficiency of EBL model, the sixth computer scientist symposium, Hangzhou, China, 1996.

  72. Xue Cuifang, Xiao-Li Li, Guo Binyan, Text structure analysis based on the statistic method, The advances and applications on Computational Linguistics, Tsinghua University Press, 1996.

  73. Xiao-Li Li, Guo Binyan, Automatically extract Chinese syntactic rules based on EBL method, Journal of National University of Defense Technology, 1995.

  74. Xiao-Li Li, Guo Binyan, A EBL model to analyse Chinese sentences, Journal of Shanxi University, 1995.

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